Stem-loop ppt-MIR1219d

Accession

MI0004721

Description

Physcomitrella patens ppt-MIR1219d precursor miRNA

Gene family

MIPF0000346; MIR1219

Sequence

agaggcgugugcggagcaccgugagucuUUUCCUGCCUCUCACUAGCUUcuucccucccugccugagucgcagucugggagguaaggagcuauugguagacaggaauagcgcgcacguagucccacgcauguuucu
(((((((((((.((.((..((((.((((.((((((.((.(((.(((((((((.((((((.(.(((.....))).).)))))).))))))))).))).)).)))))).)).)).))))..)).)).)))))))))))

Structure

           c  a  ac    a  -  U      C  C   C         c      u c   a 
agaggcgugug gg gc  cgug gu cu UUCCUG CU UCA UAGCUUcuu ccuccc g cug g
||||||||||| || ||  |||| || || |||||| || ||| ||||||||| |||||| | ||| u
ucuuuguacgc cc ug  gcac cg ga aaggac ga ggu aucgaggaa ggaggg c gac c
           a  c  au    g  c  u      a  u   u         u      u u   g 

Annotation confidence Not enough data

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr13: 16867876-16868011 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1219d

Mature ppt-miR1219d

• Accession: MIMAT0003911
• Description: Physcomitrella patens ppt-miR1219d mature miRNA
• Sequence: 29 - UUUCCUGCCUCUCACUAGCUU - 49
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37