Stem-loop ppt-MIR1219c

Accession

MI0004720

Description

Physcomitrella patens ppt-MIR1219c precursor miRNA

Gene family

MIPF0000346; MIR1219

Sequence

ggccuCUUCCUGCCUCUCACUAGCUUcaucccucagaagcugaaucuucucagggaaggagcuacugaagagcaggaauagauugcacucuuggacuccaaccaaucugucuuccauuauuuguguacucaaauucuucuguuguaguggcc
((((.((((((((.(((((.(((((((.(((((.(((((......))))).))))).))))))).)).)))))))))((((((((.....((((...)))).))))))))........(((((......)))))...........)).))))

Structure

    u  --------------------------------------------------------------------      C   -  C       a     c     cu 
ggcc CU                                                                    UCCUGC UCU CA UAGCUUc ucccu agaag  g
|||| ||                                                                    |||||| ||| || ||||||| ||||| |||||   
ccgg ga                                                                    aggacg aga gu aucgagg aggga ucuuc  a
    u  uguugucuucuuaaacucauguguuuauuaccuucugucuaaccaaccucagguucucacguuagaua      -   a  c       a     c     ua 

Annotation confidence Not enough data

Genome context

Chr13: 16868122-16868273 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1219c

Mature ppt-miR1219c

• Accession: MIMAT0003910
• Description: Physcomitrella patens ppt-miR1219c mature miRNA
• Sequence: 6 - CUUCCUGCCUCUCACUAGCUU - 26
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37