miRBase entry: ppt-MIR1217

Stem-loop ppt-MIR1217


Accession
MI0004716
Description
Physcomitrella patens ppt-MIR1217 precursor miRNA


Sequence

uccuguuucugguugaucuUGGUAUCAUGUUGCAAAUGGCaaaaccugugaccggaaugguacucaguuuuugaAAUUUGAAGCAUGAUGUCAAGuacaacggaaguugga
(((..((((((.(((..((((((((((((((.(((((..(((((.(((.((((.....))).).))).)))))..))))).))))))))))))))..)))))))))..)))

Structure
   ug      g   au              G     GG     c   u -   g 
ucc  uuucug uug  cuUGGUAUCAUGUU CAAAU  Caaaa cug g acc g
|||  |||||| |||  |||||||||||||| |||||  ||||| ||| | ||| a
agg  gaaggc aac  GAACUGUAGUACGA GUUUA  guuuu gac c ugg a
   uu      -   au              A     Aa     u   u a   u 


Annotation confidence Not enough data
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Genome context
Chr22: 11454069-11454179 [+]

Database links

Mature ppt-miR1217-5p

Accession MIMAT0004830
Description Physcomitrella patens ppt-miR1217-5p mature miRNA
Sequence 20 - UGGUAUCAUGUUGCAAAUGGC - 40
Evidence experimental
454 [2]

Mature ppt-miR1217-3p

Accession MIMAT0003906
Description Physcomitrella patens ppt-miR1217-3p mature miRNA
Sequence 75 - AAUUUGAAGCAUGAUGUCAAG - 95
Evidence experimental
Northern [1], 454 [2]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769

  2. PubMed ID: 16824179
    Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
    "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
    "Plant J (2006) 47:25-37