Stem-loop ppt-MIR1211

Accession

MI0004710

Description

Physcomitrella patens ppt-MIR1211 precursor miRNA

Sequence

uuacaugauugucaacAGGGAGGGAUGGUUAUGCAAGagggugcaagagguggcagaucaucucuugaagcaucuUGCAUGACCGUCUCUUCCUGCagguagaguuauguaa
.(((((((((.((..(((((((((((((((((((((((.(.(.(((((((((......))))))))).).).)))))))))))))))))))))))...).).))))))))).

Structure

u         g - -aa                       g g g         gc 
 uacaugauu u c   cAGGGAGGGAUGGUUAUGCAAGa g u caagaggug  a
 ||||||||| | |   ||||||||||||||||||||||| | | |||||||||   
 auguauuga a g   GUCCUUCUCUGCCAGUACGUucu c a guucucuac  g
a         g u gaC                       a g a         ua 

Annotation confidence Not enough data

Comments

Talmor-Neiman et al. identified a mature miRNA from the 5' arm of this precursor, and called it miR1211 [1]. Axtell et al. show by deep sequencing that the 3' product is the predominant one [3]. The 5' miRNA is renamed miR1211* here.

Genome context

Chr04: 8310044-8310155 [-]

Mature ppt-miR1211-5p

• Accession: MIMAT0003900
• Description: Physcomitrella patens ppt-miR1211-5p mature miRNA
• Sequence: 17 - AGGGAGGGAUGGUUAUGCAAG - 37
• Evidence: experimental ; Northern [1]

Mature ppt-miR1211-3p

• Accession: MIMAT0004829
• Description: Physcomitrella patens ppt-miR1211-3p mature miRNA
• Sequence: 76 - UGCAUGACCGUCUCUUCCUGC - 96
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37