Stem-loop sequence mmu-mir-505

Accession

MI0004706 (change log)

Symbol

MGI:Mir505

Description

Mus musculus miR-505 stem-loop

Gene family

MIPF0000217; mir-505

Literature search

14 open access papers mention mmu-mir-505
(86 sentences)

Stem-loop

   aaau      ac    u   gg      g    a        -u  g 
5'     ugaugc  ccag ggg  agccag aagu uugauguu  cu c
       ||||||  |||| |||  |||||| |||| ||||||||  ||  
3'     acuaug  gguc cuc  uugguc uuca aacugcga  gg c
   ----      -a    u   uu      g    c        uu  a 

Deep sequencing

4936 reads, 3.12 reads per million, 96 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 60394403-60394492 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000042662 ; Atp11c-001; intron 1

  OTTMUST00000042675 ; Atp11c-003; intron 1

  ENSMUST00000154051 ; Atp11c-001; intron 1

  ENSMUST00000138569 ; Atp11c-003; intron 1

  ENSMUST00000033480 ; Atp11c-201; intron 1

  ENSMUST00000101527 ; Atp11c-202; intron 1

Database links

• EntrezGene:Mir505
• MGI:Mir505
• RNAcentral:URS000075BA34_10090
• miRBase Tracker:MI0004706

Mature sequence mmu-miR-505-5p

• Accession: MIMAT0017259
• Sequence: 20 - gggagccaggaaguauugauguu - 42
• Deep sequencing: 4061 reads, 93 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00004388BE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-505-5p
  • miRDB:mmu-miR-505-5p

Mature sequence mmu-miR-505-3p

• Accession: MIMAT0003513
• Previous IDs: mmu-miR-505
• Sequence: 56 - cgucaacacuugcugguuuucu - 77
• Deep sequencing: 869 reads, 73 experiments
• Evidence: experimental; MPSS [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000145EC3_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-505-3p.1
  • miRDB:mmu-miR-505-3p
  • microrna.org:mmu-miR-505-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).