Stem-loop sequence mmu-mir-455

Accession

MI0004679 (change log)

Symbol

MGI:Mir455

Description

Mus musculus miR-455 stem-loop

Gene family

MIPF0000129; mir-455

Literature search

41 open access papers mention mmu-mir-455
(490 sentences)

Stem-loop

   cucccu  u ug  c          u      a   c   aa 
5'       gg g  ag guaugugccu uggacu cau gug  c
         || |  || |||||||||| |||||| ||| |||  g
3'       cu c  uc cauauacggg accuga gua cac  c
   -----a  c gu  a          c      c   c   ga 

Deep sequencing

26253 reads, 70.2 reads per million, 104 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr4: 63256851-63256932 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000054416 ; Col27a1-004; intron 7

  OTTMUST00000000702 ; Col27a1-002; intron 10

  OTTMUST00000054415 ; Col27a1-003; intron 10

  OTTMUST00000000701 ; Col27a1-001; intron 10

  ENSMUST00000184067 ; Col27a1-004; intron 7

  ENSMUST00000125504 ; Col27a1-002; intron 10

  ENSMUST00000148751 ; Col27a1-003; intron 10

  ENSMUST00000036300 ; Col27a1-001; intron 10

Database links

• EntrezGene:Mir455
• MGI:Mir455
• RNAcentral:URS000075CEE5_10090
• miRBase Tracker:MI0004679

Mature sequence mmu-miR-455-5p

• Accession: MIMAT0003485
• Previous IDs: mmu-miR-455;mmu-miR-455-5p;mmu-miR-455*
• Sequence: 17 - uaugugccuuuggacuacaucg - 38
• Deep sequencing: 10254 reads, 97 experiments
• Evidence: experimental; MPSS [1], miRAP-cloned [2], Illumina [4-5]
• Database links:
  • RNAcentral:URS00000AD002_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-455-5p
  • miRDB:mmu-miR-455-5p
  • microrna.org:mmu-miR-455-5p

Mature sequence mmu-miR-455-3p

• Accession: MIMAT0003742
• Previous IDs: mmu-miR-455-3p;mmu-miR-455
• Sequence: 54 - gcaguccacgggcauauacac - 74
• Deep sequencing: 15984 reads, 101 experiments
• Evidence: experimental; MPSS [1], miRAP-cloned [2], cloned [3], Illumina [4-5]
• Database links:
  • RNAcentral:URS000033C95A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-455-3p.1
  • miRDB:mmu-miR-455-3p
  • microrna.org:mmu-miR-455-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16973894 "Mouse microRNA profiles determined with a new and sensitive cloning method" Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H Nucleic Acids Res. 34:e115(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).