Stem-loop sequence mmu-mir-669c

Accession

MI0004673 (change log)

Symbol

MGI:Mir669c

Description

Mus musculus miR-669c stem-loop

Gene family

MIPF0000316; mir-467

Literature search

20 open access papers mention mmu-mir-669c
(43 sentences)

Stem-loop

      --cca   a       g     a  g         ga         -   cau 
5' ccu     ugu ugugcau ugugu ua uugugugug  uguguguau uug   a
   |||     ||| ||||||| ||||| || |||||||||  ||||||||| |||    
3' gga     aca acacgug acaca au aacacacac  acacacaua aau   u
      cacag   a       a     a  g         --         c   aaa 

Deep sequencing

294611 reads, 3.1e+03 reads per million, 161 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10509296-10509404 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669c

• mmu-mir-669a-11: chr2: 10501339-10501425 [+]
• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir669c
• MGI:Mir669c
• RNAcentral:URS000075B891_10090
• miRBase Tracker:MI0004673

Mature sequence mmu-miR-669c-5p

• Accession: MIMAT0003479
• Previous IDs: mmu-miR-669c
• Sequence: 24 - auaguuguguguggaugugugu - 45
• Deep sequencing: 277501 reads, 103 experiments
• Evidence: experimental; MPSS [1], cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00000D9C2B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669c-5p
  • miRDB:mmu-miR-669c-5p
  • microrna.org:mmu-miR-669c-5p

Mature sequence mmu-miR-669c-3p

• Accession: MIMAT0017253
• Previous IDs: mmu-miR-669c*
• Sequence: 64 - uacacacacacacacaaguaaa - 85
• Deep sequencing: 13042 reads, 158 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS000017F8F2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669c-3p
  • miRDB:mmu-miR-669c-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).