Stem-loop sequence mmu-mir-669b

Accession

MI0004666 (change log)

Symbol

MGI:Mir669b

Description

Mus musculus miR-669b stem-loop

Gene family

MIPF0000316; mir-467

Literature search

14 open access papers mention mmu-mir-669b
(18 sentences)

Stem-loop

   augaaugua           a    gu        c     c     ug cu 
5'          ugugcaugugu uaua  uuugugug augug augug  u  a
            ||||||||||| ||||  |||||||| ||||| |||||  |   
3'          acgcguacgca auau  aaacacac uacau uacau  a  u
   ---------           c    ac        a     a     gu au 

Deep sequencing

11236 reads, 619 reads per million, 108 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10467790-10467886 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669b

• mmu-mir-466m: chr2: 10466663-10466746 [+]
• mmu-mir-466f-1: chr2: 10466944-10467037 [+]
• mmu-mir-669f: chr2: 10467229-10467349 [+]
• mmu-mir-669e: chr2: 10467495-10467613 [+]
• mmu-mir-669b: chr2: 10467790-10467886 [+]
• mmu-mir-669d: chr2: 10468343-10468463 [+]
• mmu-mir-466f-2: chr2: 10468675-10468768 [+]
• mmu-mir-669l: chr2: 10468971-10469068 [+]
• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]

Database links

• EntrezGene:Mir669b
• MGI:Mir669b
• RNAcentral:URS000075AC22_10090
• miRBase Tracker:MI0004666

Mature sequence mmu-miR-669b-5p

• Accession: MIMAT0003476
• Previous IDs: mmu-miR-669b
• Sequence: 25 - aguuuugugugcaugugcaugu - 46
• Deep sequencing: 5336 reads, 99 experiments
• Evidence: experimental; MPSS [1], Illumina [2]
• Database links:
  • RNAcentral:URS000015A0DE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669b-5p
  • miRDB:mmu-miR-669b-5p
  • microrna.org:mmu-miR-669b-5p

Mature sequence mmu-miR-669b-3p

• Accession: MIMAT0017250
• Previous IDs: mmu-miR-669b*
• Sequence: 62 - cauauacauacacacaaacauau - 84
• Deep sequencing: 5767 reads, 95 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004368C8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669b-3p
  • miRDB:mmu-miR-669b-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).