miRBase entry: mmu-mir-449c

Stem-loop mmu-mir-449c


Accession
MI0004645
Symbol
MGI: Mir449c
Description
Mus musculus mmu-mir-449c precursor miRNA
Gene family
MIPF0000133; mir-449

Literature search
48 open access papers mention mmu-mir-449c
(285 sentences)

Sequence

3221 reads, 199 reads per million, 75 experiments
aggaugaagugugggugugucaggcAGGCAGUGCAUUGCUAGCUGGcuguuagaacuuuaucccaaCAGUUGCUAGCUGCACUACCCUcugcugcacucagaagcaugc
.(.(((.....((((((((.((((..((.((((((..((((((.(((((((.((......))..))))))))))))))))))).)).)))).))))))))....))).)

Structure
a g   aagug        u    cA  C      UU      U       -a  ac 
 g aug     ugggugug cagg  GG AGUGCA  GCUAGC GGcuguu  ga  u
 | |||     |||||||| ||||  || ||||||  |||||| |||||||  ||   
 c uac     acucacgu gucU  CC UCACGU  CGAUCG UUGACaa  cu  u
- g   -gaag        c    -C  A      --      -       cc  au 


Annotation confidence Not enough data
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Genome context
chr13: 113035983-113036091 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-449c-5p

Accession MIMAT0003460
Description Mus musculus mmu-miR-449c-5p mature miRNA
Sequence 26 - AGGCAGUGCAUUGCUAGCUGG - 46
Evidence experimental
MPSS [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-449c-3p

Accession MIMAT0022715
Description Mus musculus mmu-miR-449c-3p mature miRNA
Sequence 67 - CAGUUGCUAGCUGCACUACCCU - 88
Evidence not_experimental

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771