miRBase entry: mmu-mir-344d-2

Stem-loop mmu-mir-344d-2


Accession
MI0004619
Symbol
MGI: Mir344d-2
Description
Mus musculus mmu-mir-344d-2 precursor miRNA
Gene family
MIPF0000267; mir-344

Literature search
10 open access papers mention mmu-mir-344d-2
(34 sentences)

Sequence

9355 reads, 42 reads per million, 43 experiments
agauuucauuAGUCUGGUUGCUGGCUAUAUUCCAggacuuaucugguccugGAUAUAACCACUGCCAGACUGAauggugc
.....(((((((((((((.(.(((.(((((.((((((((.....))))))))))))).)))).))))))))).))))...

Structure
agauu    -         U C   C     U        u 
     ucau uAGUCUGGU G UGG UAUAU CCAggacu a
     |||| ||||||||| | ||| ||||| |||||||| u
     ggua GUCAGACCG C ACC AUAUA Gguccugg c
--cgu    A         U -   A     -        u 


Annotation confidence Not enough data
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context
chr7: 61685272-61685351 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-344d-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-344d-3p

Accession MIMAT0014808
Description Mus musculus mmu-miR-344d-3p mature miRNA
Sequence 52 - GAUAUAACCACUGCCAGACUGA - 73
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mmu-miR-344d-2-5p

Accession MIMAT0014961
Description Mus musculus mmu-miR-344d-2-5p mature miRNA
Sequence 11 - AGUCUGGUUGCUGGCUAUAUUCCA - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298