Stem-loop sequence mmu-mir-669a-1

Accession

MI0004523 (change log)

Symbol

MGI:Mir669a-1

Description

Mus musculus miR-669a-1 stem-loop

Gene family

MIPF0000316; mir-467

Literature search

15 open access papers mention mmu-mir-669a-1
(22 sentences)

Stem-loop

   u   --     a     g    gu        c     c    c   au 
5'  gua  ugugc ugugu uaua  ugugugug auguu augu uau  u
    |||  ||||| ||||| ||||  |||||||| ||||| |||| |||   
3'  cau  acacg acgca auau  acacacac uacaa uaca aua  u
   a   ac     a     a    gc        a     -    u   ag 

Deep sequencing

98169 reads, 266 reads per million, 105 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The sequence of miR-669a-1 is of low complexity. The sequence maps exactly to several genomic positions, and many more with 1 or 2 substitutions. Confidence in this miRNA might therefore be reduced.

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10476853-10476949 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669a-1

• mmu-mir-466f-1: chr2: 10466944-10467037 [+]
• mmu-mir-669f: chr2: 10467229-10467349 [+]
• mmu-mir-669e: chr2: 10467495-10467613 [+]
• mmu-mir-669b: chr2: 10467790-10467886 [+]
• mmu-mir-669d: chr2: 10468343-10468463 [+]
• mmu-mir-466f-2: chr2: 10468675-10468768 [+]
• mmu-mir-669l: chr2: 10468971-10469068 [+]
• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]

Database links

• EntrezGene:Mir669a-1a
• MGI:Mir669a-1
• RNAcentral:URS000075C2B3_10090
• miRBase Tracker:MI0004523

Mature sequence mmu-miR-669a-5p

• Accession: MIMAT0003477
• Previous IDs: mmu-miR-669a
• Sequence: 20 - aguugugugugcauguucaugucu - 43
• Deep sequencing: 946140 reads, 103 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002AA0E2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669a-5p
  • miRDB:mmu-miR-669a-5p
  • microrna.org:mmu-miR-669a-5p

Mature sequence mmu-miR-669a-3p

• Accession: MIMAT0017243
• Sequence: 56 - acauaacauacacacacacguau - 78
• Deep sequencing: 209132 reads, 101 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000061264D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669a-3p
  • miRDB:mmu-miR-669a-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).