Stem-loop sequence mmu-mir-3106

Accession

MI0004486 (change log)

Symbol

MGI:Mir3106

Description

Mus musculus miR-3106 stem-loop

Stem-loop

       a        -u       u  gaa        a ac 
5' aggg agcacagg  ggcucau ua   gcagccau c  u
   |||| ||||||||  ||||||| ||   |||||||| |  c
3' ucuc ucgugucc  ucgggua au   cgucggug g  a
       c        uu       c  auc        a ag 

Deep sequencing

763 reads, 0 reads per million, 36 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 16168757-16168838 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000085821 ; Csmd1-003; intron 23

  OTTMUST00000085800 ; Csmd1-001; intron 23

  ENSMUST00000082104 ; Csmd1-001; intron 23

  ENSMUST00000131778 ; Csmd1-003; intron 23

Database links

• EntrezGene:Mir3106
• MGI:Mir3106
• RNAcentral:URS000075DCCA_10090
• miRBase Tracker:MI0004486

Mature sequence mmu-miR-3106-5p

• Accession: MIMAT0014817
• Previous IDs: mmu-miR-3106
• Sequence: 14 - uggcucauuuagaagcagcca - 34
• Deep sequencing: 702 reads, 28 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003D7373_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3106-5p
  • miRDB:mmu-miR-3106-5p

Mature sequence mmu-miR-3106-3p

• Accession: MIMAT0014818
• Previous IDs: mmu-miR-3106*
• Sequence: 50 - gcugccuauacaugggcuuucc - 71
• Deep sequencing: 11 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000483DFD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3106-3p
  • miRDB:mmu-miR-3106-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).