miRBase entry: mmu-mir-3058

Stem-loop mmu-mir-3058


Accession
MI0004418
Symbol
MGI: Mir3058
Description
Mus musculus mmu-mir-3058 precursor miRNA

Literature search
2 open access papers mention mmu-mir-3058
(3 sentences)

Sequence

175 reads, 10 reads per million, 49 experiments
uccagcguuggagUCAGCCACGGCUUACCUGGAAGAuugaaugucuacuuggcuuucUUCCUGUCAGCCGUGGGUGCCucuugcuacugga
(((((.((.((((.((.((((((((.((..((((((......(((.....)))..)))))).)).)))))))).)).)))).))..)))))

Structure
     -c  u    U  G        U  CU      uugaau   u 
uccag  gu ggag CA CCACGGCU AC  GGAAGA      guc a
|||||  || |||| || |||||||| ||  ||||||      ||| c
agguc  cg ucuC GU GGUGCCGA UG  CCUUcu      cgg u
     au  u    C  G        C  -U      ----uu   u 


Annotation confidence High
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context
chr10: 95559231-95559321 [-]

Database links

Mature mmu-miR-3058-5p

Accession MIMAT0014813
Description Mus musculus mmu-miR-3058-5p mature miRNA
Sequence 14 - UCAGCCACGGCUUACCUGGAAGA - 36
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mmu-miR-3058-3p

Accession MIMAT0014814
Description Mus musculus mmu-miR-3058-3p mature miRNA
Sequence 58 - UUCCUGUCAGCCGUGGGUGCC - 78
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298