Stem-loop sequence mmu-mir-764

Accession

MI0004310 (change log)

Symbol

MGI:Mir764

Description

Mus musculus miR-764 stem-loop

Gene family

MIPF0000707; mir-764

Literature search

1 open access papers mention mmu-mir-764
(2 sentences)

Stem-loop

   u    ac    ug    u   a     g   u   -   u           cuua 
5'  caac  aauc  aauc ugg ggcag ugc cac aug ccuccuccaug    u
    ||||  ||||  |||| ||| ||||| ||| ||| ||| |||||||||||     
3'  guug  uuag  uuag acc cuguc acg gug uac ggaggagguac    a
   g    cu    --    u   a     a   -   a   c           auaa 

Deep sequencing

528 reads, 0 reads per million, 20 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 147002259-147002366 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000045550 ; Htr2c-004; intron 2

  OTTMUST00000045548 ; Htr2c-002; intron 2

  OTTMUST00000045549 ; Htr2c-003; intron 2

  OTTMUST00000045553 ; Htr2c-007; intron 2

  OTTMUST00000045552 ; Htr2c-006; intron 2

  OTTMUST00000045515 ; Htr2c-001; intron 3

  ENSMUST00000112831 ; Htr2c-006; intron 2

  ENSMUST00000134368 ; Htr2c-007; intron 2

  ENSMUST00000156697 ; Htr2c-003; intron 2

  ENSMUST00000036303 ; Htr2c-002; intron 2

  ENSMUST00000131999 ; Htr2c-004; intron 2

  ENSMUST00000096299 ; Htr2c-001; intron 3

Clustered miRNAs

< 10kb from mmu-mir-764

• mmu-mir-3552: chrX: 146999405-146999509 [+]
• mmu-mir-764: chrX: 147002259-147002366 [+]
• mmu-mir-1912: chrX: 147009441-147009527 [+]
• mmu-mir-1264: chrX: 147010601-147010686 [+]

Database links

• EntrezGene:Mir764
• MGI:Mir764
• RNAcentral:URS0000699C5F_10090
• miRBase Tracker:MI0004310

Mature sequence mmu-miR-764-5p

• Accession: MIMAT0003894
• Sequence: 27 - ggugcucacauguccuccu - 45
• Deep sequencing: 44 reads, 12 experiments
• Evidence: experimental; PCR [1], RAKE [1], Illumina [2]
• Database links:
  • RNAcentral:URS000052A9CE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-764-5p
  • miRDB:mmu-miR-764-5p
  • microrna.org:mmu-miR-764-5p

Mature sequence mmu-miR-764-3p

• Accession: MIMAT0003895
• Sequence: 66 - aggaggccauaguggcaacugu - 87
• Deep sequencing: 482 reads, 19 experiments
• Evidence: experimental; PCR [1], RAKE [1], Illumina [2]
• Database links:
  • RNAcentral:URS00001469FB_10090
• Predicted targets:
  • miRDB:mmu-miR-764-3p
  • microrna.org:mmu-miR-764-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).