miRBase entry: mmu-mir-3475

Stem-loop mmu-mir-3475


Accession
MI0004220
Symbol
MGI: Mir3475
Description
Mus musculus mmu-mir-3475 precursor miRNA


Sequence

1461 reads, 41 reads per million, 46 experiments
cAAAUCAUGUACCCCCACAGAGGguccagaugguucuuaguucuUCUGGAGGCACAUGGUUUGAA
((((((((((...((..(((((((...(((....)))....)))))))..)).))))))))))..

Structure
--          ACC  CA       -ucc   u 
  cAAAUCAUGU   CC  CAGAGGg    aga g
  ||||||||||   ||  |||||||    |||  
  GUUUGGUACA   GG  GUCUucu    ucu g
AA          --C  AG       ugau   u 


Annotation confidence Not enough data
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Comments
This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was independently shown by Illumina sequencing [2].

Genome context
chrX: 140310948-140311012 [+]

Database links

Mature mmu-miR-3475-3p

Accession MIMAT0015219
Description Mus musculus mmu-miR-3475-3p mature miRNA
Sequence 45 - UCUGGAGGCACAUGGUUUGAA - 65
Evidence experimental
Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-3475-5p

Accession MIMAT0026642
Description Mus musculus mmu-miR-3475-5p mature miRNA
Sequence 2 - AAAUCAUGUACCCCCACAGAGG - 23
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45