Stem-loop sequence mmu-mir-665

Accession

MI0004171 (change log)

Symbol

MGI:Mir665

Description

Mus musculus miR-665 stem-loop

Gene family

MIPF0000404; mir-665

Literature search

10 open access papers mention mmu-mir-665
(88 sentences)

Stem-loop

   --agaaca     u   -           u      aucca  a     u 
5'         ggguc ccu ugaggggccuc gccucu     gg uuaug u
           ||||| ||| ||||||||||| ||||||     || |||||  
3'         uccgg gga auucccuggag cggagg     cc aguau u
   ucucauuc     c   c           u      ----a  -     u 

Deep sequencing

18485 reads, 121 reads per million, 76 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109586314-109586407 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-665

• mmu-mir-493: chr12: 109580233-109580315 [+]
• mmu-mir-337: chr12: 109585789-109585885 [+]
• mmu-mir-3544: chr12: 109585813-109585873 [-]
• mmu-mir-540: chr12: 109586080-109586146 [+]
• mmu-mir-665: chr12: 109586314-109586407 [+]
• mmu-mir-3070-1: chr12: 109587943-109588031 [+]
• mmu-mir-3070-2: chr12: 109588592-109588680 [+]
• mmu-mir-431: chr12: 109590447-109590537 [+]
• mmu-mir-433: chr12: 109591715-109591838 [+]
• mmu-mir-127: chr12: 109592846-109592915 [+]
• mmu-mir-434: chr12: 109594506-109594599 [+]
• mmu-mir-432: chr12: 109594956-109595030 [+]
• mmu-mir-3071: chr12: 109595318-109595397 [-]
• mmu-mir-136: chr12: 109595327-109595388 [+]

Database links

• EntrezGene:Mir665
• MGI:Mir665
• RNAcentral:URS000069384A_10090
• miRBase Tracker:MI0004171

Mature sequence mmu-miR-665-5p

• Accession: MIMAT0017238
• Previous IDs: mmu-miR-665*
• Sequence: 18 - aggggccucugccucuauccaggauu - 43
• Deep sequencing: 232 reads, 33 experiments
• Evidence: experimental; Illumina [5]
• Database links:
  • RNAcentral:URS0000497D67_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-665-5p
  • miRDB:mmu-miR-665-5p

Mature sequence mmu-miR-665-3p

• Accession: MIMAT0003733
• Previous IDs: mmu-miR-665
• Sequence: 55 - accaggaggcugaggucccu - 74
• Deep sequencing: 18249 reads, 77 experiments
• Evidence: experimental; MPSS [1], cloned [2-3], Illumina [4-5]
• Database links:
  • RNAcentral:URS0000496F65_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-665-3p
  • miRDB:mmu-miR-665-3p
  • microrna.org:mmu-miR-665-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).