Stem-loop sequence mmu-mir-1843a

AccessionMI0004155 (change log)
Previous IDsmmu-mir-1843
Symbol MGI:Mir1843a
DescriptionMus musculus miR-1843 stem-loop
Gene family MIPF0001119; mir-1843
Literature search

2 open access papers mention mmu-mir-1843a
(8 sentences)

Stem-loop 
   -gaa         -cu u   u       aau 
5'     uauggaggu   c guc gacuuag   a
       |||||||||   | ||| |||||||   g
3'     auaccucca   g uag cugaguc   c
   caac         cuu c   u       ggu
Get sequence
Deep sequencing
102699 reads, 18.6 reads per million, 102 experiments
Confidence Annotation confidence: high
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Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2]. This sequence was retracted by the authors prior to publication [2].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr12: 80391613-80391677 [-]
sense
ENSMUST00000157533 ; Scarna3b-201; exon 1
ENSMUST00000054145 ; Dcaf5-201; intron 5
Database links

Mature sequence mmu-miR-1843a-5p

Accession MIMAT0014805
Previous IDsmmu-miR-1843-5p
Sequence

4 -  

uauggaggucucugucugacu

 - 24

Get sequence
Deep sequencing87728 reads, 102 experiments
Evidence experimental; Illumina [2-3]
Database links
Predicted targets

Mature sequence mmu-miR-1843a-3p

Accession MIMAT0014806
Previous IDsmmu-miR-1843-3p
Sequence

42 -  

ucugaucguucaccuccauaca

 - 63

Get sequence
Deep sequencing14952 reads, 90 experiments
Evidence experimental; Illumina [2-3]
Database links
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).
3
PMID:20935160 "Next-generation sequencing identifies the natural killer cell microRNA transcriptome" Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER Genome Res. 20:1590-1604(2010).