Stem-loop sequence mmu-mir-1249

AccessionMI0004132 (change log)
Symbol MGI:Mir1249
DescriptionMus musculus miR-1249 stem-loop
Gene family MIPF0000667; mir-1249
Literature search

8 open access papers mention mmu-mir-1249
(11 sentences)

      -uucuu      gu  -         a     u    caa     cua 
5' cga      guuugc  gg ggaggaggg gggga gggc   guucc   u
   |||      ||||||  || ||||||||| ||||| ||||   |||||    
3' gcu      caagcg  cc cuucuuccc ccccu cccg   caagg   g
      cauccu      gu  a         -     u    ---     ucc 
Get sequence
Deep sequencing
8331 reads, 40.4 reads per million, 99 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later in mouse ES cells [2].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr15: 84951526-84951623 [-]
OTTMUST00000069764 ; RP23-180L12.1-002; exon 6
OTTMUST00000069763 ; RP23-180L12.1-001; intron 7
ENSMUST00000124308 ; 5031439G07Rik-002; exon 6
ENSMUST00000165743 ; 5031439G07Rik-201; intron 7
ENSMUST00000047144 ; 5031439G07Rik-001; intron 7
Database links

Mature sequence mmu-miR-1249-5p

Accession MIMAT0014804
Previous IDsmmu-miR-1249*

21 - 


 - 45

Get sequence
Deep sequencing225 reads, 43 experiments
Evidence experimental; Illumina [3]
Database links
Predicted targets

Mature sequence mmu-miR-1249-3p

Accession MIMAT0010560
Previous IDsmmu-miR-1249

58 - 


 - 79

Get sequence
Deep sequencing8098 reads, 94 experiments
Evidence experimental; RAKE [1], 454 [2], Illumina [3]
Database links
Predicted targets


PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).