miRBase entry: mmu-mir-758

Stem-loop mmu-mir-758


Accession
MI0004129
Symbol
MGI: Mir758
Description
Mus musculus mmu-mir-758 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
4 open access papers mention mmu-mir-758
(10 sentences)

Sequence

2891 reads, 83 reads per million, 40 experiments
ugggugcgugaggUGGUUGACCAGAGAGCACACGcuauauuugugccgUUUGUGACCUGGUCCACUAacccucaguaucua
(((((((.(((((((((.((((((.(.(((.(((.(((....))).))).)))..))))))).))))..))))))))))))

Structure
       g     --    U      A -A   C   c   a 
ugggugc ugagg  UGGU GACCAG G  GCA ACG uau u
||||||| |||||  |||| |||||| |  ||| ||| |||  
aucuaug acucc  AUCA CUGGUC C  UGU Ugc gug u
       -     ca    C      - AG   U   c   u 


Annotation confidence High
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Genome context
chr12: 109712810-109712890 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from mmu-mir-758
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-758-5p

Accession MIMAT0017235
Description Mus musculus mmu-miR-758-5p mature miRNA
Sequence 14 - UGGUUGACCAGAGAGCACACG - 34
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-758-3p

Accession MIMAT0003889
Description Mus musculus mmu-miR-758-3p mature miRNA
Sequence 49 - UUUGUGACCUGGUCCACUA - 67
Evidence experimental
cloned [1], 454 [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298

  4. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102