Stem-loop sequence mmu-mir-301b

AccessionMI0004122 (change log)
Symbol MGI:Mir301b
DescriptionMus musculus miR-301b stem-loop
Gene family MIPF0000034; mir-130
Literature search

24 open access papers mention mmu-mir-301b
(56 sentences)

   u   -cu     c g        c    uagguugc    c  ug    g 
5'  uuc   gcugg u cgggugcu ugac        acua ug  cugu a
    |||   ||||| | |||||||| ||||        |||| ||  |||| g
3'  aag   cgacc g gucuacga acug        uggu ac  gacg a
   g   cuc     a g        a    -----uua    a  gu    a 
Get sequence
Deep sequencing
161781 reads, 828 reads per million, 108 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr16: 17124400-17124496 [-]
ENSMUST00000093336 ; 2610318N02Rik-201; intron 1
Clustered miRNAs
< 10kb from mmu-mir-301b
mmu-mir-301bchr16: 17124400-17124496 [-]
mmu-mir-130bchr16: 17124061-17124142 [-]
Database links

Mature sequence mmu-miR-301b-5p

Accession MIMAT0017232
Previous IDsmmu-miR-301b*

20 - 


 - 41

Get sequence
Deep sequencing261 reads, 35 experiments
Evidence experimental; Illumina [5]
Database links
Predicted targets

Mature sequence mmu-miR-301b-3p

Accession MIMAT0004186
Previous IDsmmu-miR-301b

55 - 


 - 77

Get sequence
Deep sequencing161490 reads, 108 experiments
Evidence experimental; miRAP-cloned [1], cloned [2], 454 [3], Illumina [4-5]
Database links
Predicted targets


PMID:16973894 "Mouse microRNA profiles determined with a new and sensitive cloning method" Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H Nucleic Acids Res. 34:e115(2006).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).