Stem-loop sequence mmu-mir-1247

Accession

MI0004120 (change log)

Symbol

MGI:Mir1247

Description

Mus musculus miR-1247 stem-loop

Gene family

MIPF0000669; mir-1247

Literature search

3 open access papers mention mmu-mir-1247
(4 sentences)

Stem-loop

   cggccgc       a  c   c  uu   c     acguu  u 
5'        cgggcgc cc guc cg  cgu cccgg     gc c
          ||||||| || ||| ||  ||| |||||     || u
3'        gcccgcg gg cag gc  gca gggcc     cg c
   --gucaa       a  u   a  -u   a     ----c  u 

Deep sequencing

7002 reads, 30.7 reads per million, 75 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 110278048-110278129 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000181693 ; Dio3os-201; exon 1

Database links

• EntrezGene:Mir1247
• MGI:Mir1247
• RNAcentral:URS000075D63C_10090
• miRBase Tracker:MI0004120

Mature sequence mmu-miR-1247-5p

• Accession: MIMAT0014800
• Previous IDs: mmu-miR-1247
• Sequence: 15 - acccgucccguucguccccgga - 36
• Deep sequencing: 5758 reads, 68 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000057DF36_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1247-5p
  • miRDB:mmu-miR-1247-5p

Mature sequence mmu-miR-1247-3p

• Accession: MIMAT0014801
• Previous IDs: mmu-miR-1247*
• Sequence: 52 - cgggaacgucgagacuggagc - 72
• Deep sequencing: 1234 reads, 34 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004104C4_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1247-3p
  • miRDB:mmu-miR-1247-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).