Stem-loop sequence rno-mir-664-1

Accession

MI0003722 (change log)

Description

Rattus norvegicus miR-664-1 stem-loop

Gene family

MIPF0000300; mir-664

Literature search

5 open access papers mention rno-mir-664-1
(14 sentences)

Stem-loop

   cu         aaaa  u         aa 
5'   ggcugggga    ga uggauagaa  c
     |||||||||    || |||||||||  a
3'   ccgaccccu    uu acuuaucuu  u
   au         --ca  u         au 

Deep sequencing

46779 reads, 12.3 reads per million, 479 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr18: 47488028-47488086 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir664-1
• miRBase Tracker:MI0003722

Mature sequence rno-miR-664-1-5p

• Accession: MIMAT0017228
• Previous IDs: rno-miR-664-1*
• Sequence: 1 - cuggcuggggaaaaagauugg - 21
• Deep sequencing: 8130 reads, 421 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-664-1-5p
  • miRDB:rno-miR-664-1-5p

Mature sequence rno-miR-664-3p

• Accession: MIMAT0003382
• Previous IDs: rno-miR-664
• Sequence: 38 - uauucauuuacuccccagccua - 59
• Deep sequencing: 77272 reads, 473 experiments
• Evidence: experimental; cloned [1], Northern [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-664-3p
  • miRDB:rno-miR-664-3p
  • microrna.org:rno-miR-664-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).