Stem-loop rno-mir-499

Accession

MI0003721

Description

Rattus norvegicus rno-mir-499 precursor miRNA

Gene family

MIPF0000173; mir-499

Literature search

44 open access papers mention rno-mir-499
(523 sentences)

Sequence

126291 reads, 166 reads per million, 470 experiments

gcugUUAAGACUUGCAGUGAUGUUUagcuccucuccaugugAACAUCACAGCAAGUCUGUGCUgc
((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))

Structure

  u  UA        A          gcucc 
gc gU  AGACUUGC GUGAUGUUUa     u
|| ||  |||||||| ||||||||||     c
cg CG  UCUGAACG CACUACAAgu     u
  U  UG        A          guacc 

Annotation confidence High

Genome context

chr3: 151138862-151138926 [+]

Mature rno-miR-499-5p

• Accession: MIMAT0003381
• Description: Rattus norvegicus rno-miR-499-5p mature miRNA
• Sequence: 5 - UUAAGACUUGCAGUGAUGUUU - 25
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [2]

Mature rno-miR-499-3p

• Accession: MIMAT0017227
• Description: Rattus norvegicus rno-miR-499-3p mature miRNA
• Sequence: 42 - AACAUCACAGCAAGUCUGUGCU - 63
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249