miRBase entry: mmu-mir-302c

Stem-loop mmu-mir-302c


Accession
MI0003717
Symbol
MGI: Mir302c
Description
Mus musculus mmu-mir-302c precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
78 open access papers mention mmu-mir-302c
(477 sentences)

Sequence

378 reads, 35 reads per million, 14 experiments
ccucuGCUUUAACAUGGGGUUACCUGCuguguuaaacaaaagcAAGUGCUUCCAUGUUUCAGUGGggg
((((((((..(((((((((.(((.((((.(((...)))..)))).))).)))))))))..))))))))

Structure
        UU         U   C    -g   u 
ccucuGCU  AACAUGGGG UAC UGCu  ugu  
||||||||  ||||||||| ||| ||||  ||| a
gggGGUGA  UUGUACCUU GUG Acga  aca  
        CU         C   A    aa   a 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [1]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context
chr3: 127545363-127545430 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from mmu-mir-302c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-302c-5p

Accession MIMAT0003375
Description Mus musculus mmu-miR-302c-5p mature miRNA
Sequence 6 - GCUUUAACAUGGGGUUACCUGC - 27
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-302c-3p

Accession MIMAT0003376
Description Mus musculus mmu-miR-302c-3p mature miRNA
Sequence 44 - AAGUGCUUCCAUGUUUCAGUGG - 65
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009