Stem-loop sequence gga-mir-449a

Accession

MI0003715 (change log)

Previous IDs

gga-mir-449

Description

Gallus gallus miR-449 stem-loop

Gene family

MIPF0000133; mir-449

Literature search

5 open access papers mention gga-mir-449a
(8 sentences)

Stem-loop

   c      c  ug  g      -  ua         --  ug a 
5'  ugugug gg  gg uggcag ug  uguuagcug  gu  a a
    |||||| ||  || |||||| ||  |||||||||  ||  | c
3'  auacac uc  cc aucguu ac  acaaucgac  ca  u u
   c      c  gu  a      g  gc         ua  gu c 

Deep sequencing

90 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 16702946-16703031 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000043537 ; CDC20B-201; intron 2

Clustered miRNAs

< 10kb from gga-mir-449a

• gga-mir-449c: chrZ: 16704099-16704170 [-]
• gga-mir-449b: chrZ: 16703096-16703189 [-]
• gga-mir-449a: chrZ: 16702946-16703031 [-]
• gga-mir-449d: chrZ: 16702080-16702162 [-]

Database links

• EntrezGene:MIR449
• miRBase Tracker:MI0003715

Mature sequence gga-miR-449a

• Accession: MIMAT0003372
• Previous IDs: gga-miR-449
• Sequence: 16 - uggcaguguauguuagcuggu - 36
• Deep sequencing: 86 reads, 3 experiments
• Evidence: by similarity; MI0001650
• Predicted targets:
  • TargetScanVert:gga-miR-449a
  • miRDB:gga-miR-449a