Stem-loop sequence gga-mir-429

Accession

MI0003714 (change log)

Description

Gallus gallus miR-429 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

8 open access papers mention gga-mir-429
(16 sentences)

Stem-loop

   g  -   u     - u  c          aa       cu  cu 
5'  cc ugc gauug c gu uuaccaggca  guuagau  ag  a
    || ||| ||||| | || ||||||||||  |||||||  ||   
3'  gg acg cuaac g cg aauggucugu  uaaucug  uc  u
   -  u   -     u c  u          ca       --  uu 

Deep sequencing

30948 reads, 360 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr21: 2589432-2589515 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-429

• gga-mir-200b: chr21: 2594262-2594346 [-]
• gga-mir-200a: chr21: 2591937-2592023 [-]
• gga-mir-429: chr21: 2589432-2589515 [-]

Database links

• EntrezGene:MIR429
• RNAcentral:URS000075AA6D_9031
• miRBase Tracker:MI0003714

Mature sequence gga-miR-429-5p

• Accession: MIMAT0026635
• Sequence: 14 - ugucuuaccaggcaaaguuaga - 35
• Deep sequencing: 134 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075B0E6_9031
• Predicted targets:
  • TargetScanVert:gga-miR-429-5p
  • miRDB:gga-miR-429-5p

Mature sequence gga-miR-429-3p

• Accession: MIMAT0003371
• Sequence: 52 - uaauacugucugguaaugccgu - 73
• Deep sequencing: 30814 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002D8367_9031
• Predicted targets:
  • TargetScanVert:gga-miR-429-3p
  • miRDB:gga-miR-429-3p

References

1. " McBride D, Carre W, Law A, Clinton M Unpublished.
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).