Stem-loop sequence gga-mir-499

Accession

MI0003710 (change log)

Description

Gallus gallus miR-499 stem-loop

Gene family

MIPF0000173; mir-499

Literature search

10 open access papers mention gga-mir-499
(32 sentences)

Stem-loop

   uu     -   c  c   ua       u           ga   u 
5'   ugagg gag gg agu  agacuug agugauguuua  uaa g
     ||||| ||| || |||  ||||||| |||||||||||  |||  
3'   acucc cuc uc ucg  ucugaau ucacuacaagu  auu u
   uu     u   u  a   ug       u           ac   a 

Deep sequencing

1538845 reads, 1.58e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr20: 2734854-2734944 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000012499 ; MYH7B-201; intron 11

Database links

• EntrezGene:MIR499
• RNAcentral:URS000075DE49_9031
• miRBase Tracker:MI0003710

Mature sequence gga-miR-499-5p

• Accession: MIMAT0003367
• Sequence: 17 - uuaagacuuguagugauguuuag - 39
• Deep sequencing: 1537021 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075A118_9031
• Predicted targets:
  • TargetScanVert:gga-miR-499-5p
  • miRDB:gga-miR-499-5p

Mature sequence gga-miR-499-3p

• Accession: MIMAT0026634
• Sequence: 55 - aacaucacuuuaagucugugcu - 76
• Deep sequencing: 1813 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075D6CE_9031
• Predicted targets:
  • TargetScanVert:gga-miR-499-3p
  • miRDB:gga-miR-499-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).