Stem-loop sequence gga-mir-489

Accession

MI0003708 (change log)

Description

Gallus gallus miR-489 stem-loop

Gene family

MIPF0000111; mir-489

Literature search

2 open access papers mention gga-mir-489
(3 sentences)

Stem-loop

    ug ug c    ug             c      ua     a 
5' g  g  g uugg  gucguauguauga gucauu  cuugg c
   |  |  | ||||  ||||||||||||| ||||||  |||||  
3' c  c  c aauc  cggcauguauacu caguga  ggauu u
    gu gu a    gu             a      --     u 

Deep sequencing

3077 reads, 20 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 23147300-23147383 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000035265 ; gga-mir-489-201; exon 1

  ENSGALT00000015478 ; intron 2

Database links

• EntrezGene:MIR489
• RNAcentral:URS000075AC58_9031
• miRBase Tracker:MI0003708

Mature sequence gga-miR-489-5p

• Accession: MIMAT0026632
• Sequence: 13 - uggucguauguaugacgucauu - 34
• Deep sequencing: 116 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-489-5p
  • miRDB:gga-miR-489-5p

Mature sequence gga-miR-489-3p

• Accession: MIMAT0003365
• Sequence: 51 - agugacaucauauguacggcugc - 73
• Deep sequencing: 2952 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075E608_9031
• Predicted targets:
  • TargetScanVert:gga-miR-489-3p
  • miRDB:gga-miR-489-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).