Stem-loop sequence gga-mir-383

Accession

MI0003706 (change log)

Description

Gallus gallus miR-383 stem-loop

Gene family

MIPF0000137; mir-383

Literature search

5 open access papers mention gga-mir-383
(26 sentences)

Stem-loop

      -c  a      aa    a        -  g   a 
5' cuc  uc gaucag  ggug uuguggcu uu ggu a
   |||  || ||||||  |||| |||||||| || |||  
3' gag  ag cugguc  ucac gacaccga ga uua a
      aa  a      cg    -        c  g   u 

Deep sequencing

30195 reads, 180 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr4: 64399452-64399524 [+]	sense ENSGALT00000022249 ; SGCZ-201; intron 2
AADN04015343.1: 4580-4652 [+]	sense ENSGALT00000022249 ; SGCZ-201; intron 2

Database links

• EntrezGene:MIR383
• RNAcentral:URS000063BE74_9031
• miRBase Tracker:MI0003706

Mature sequence gga-miR-383-5p

• Accession: MIMAT0003363
• Sequence: 7 - agaucagaaggugauuguggcu - 28
• Deep sequencing: 29863 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000C5969_9031
• Predicted targets:
  • TargetScanVert:gga-miR-383-5p
  • miRDB:gga-miR-383-5p

Mature sequence gga-miR-383-3p

• Accession: MIMAT0026631
• Sequence: 48 - ccacagcacugccuggucaga - 68
• Deep sequencing: 307 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-383-3p
  • miRDB:gga-miR-383-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).