Stem-loop sequence gga-mir-375

Accession

MI0003705 (change log)

Description

Gallus gallus miR-375 stem-loop

Gene family

MIPF0000114; mir-375

Literature search

15 open access papers mention gga-mir-375
(98 sentences)

Stem-loop

   -       u      cc   u       c ga 
5'  ccuggcg cgagcc  acg gcaagac u  c
    ||||||| ||||||  ||| ||||||| |  c
3'  ggauugc gcucgg  ugc uguuuug a  u
   c       -      cu   u       c ag 

Deep sequencing

1804 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr7: 22469940-22470004 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-375

• gga-mir-375: chr7: 22469940-22470004 [+]
• gga-mir-1788: chr7: 22479317-22479404 [+]

Database links

• EntrezGene:MIR375
• RNAcentral:URS000075B612_9031
• miRBase Tracker:MI0003705

Mature sequence gga-miR-375

• Accession: MIMAT0003362
• Sequence: 41 - uuuguucguucggcucgcguua - 62
• Deep sequencing: 1803 reads, 5 experiments
• Evidence: by similarity; MI0000783
• Database links:
  • RNAcentral:URS000035563D_9031
• Predicted targets:
  • TargetScanVert:gga-miR-375
  • miRDB:gga-miR-375