Stem-loop sequence gga-mir-365-1

Accession

MI0003703 (change log)

Description

Gallus gallus miR-365-1 stem-loop

Gene family

MIPF0000061; mir-365

Literature search

4 open access papers mention gga-mir-365-1
(13 sentences)

Stem-loop

   c      aa        ac           ----   -    uu 
5'  gcaggg  aaugaggg  uuuugggggca    gau gugu  c
    ||||||  ||||||||  |||||||||||    ||| ||||  c
3'  cguucu  uuauuccu  aaaauccccgu    cua caca  a
   a      cg        -a           aaua   u    uu 

Deep sequencing

848 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr14: 769114-769198 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000004821 ; intron 2

  antisense

  ENSGALT00000035273 ; gga-mir-365b-201; exon 1

Clustered miRNAs

< 10kb from gga-mir-365-1

• gga-mir-6686: chr14: 759895-760004 [+]
• gga-mir-193b: chr14: 764296-764378 [+]
• gga-mir-365b: chr14: 769102-769211 [-]
• gga-mir-365-1: chr14: 769114-769198 [+]

Database links

• EntrezGene:MIR365-1
• miRBase Tracker:MI0003703

Mature sequence gga-miR-365-1-5p

• Accession: MIMAT0026630
• Sequence: 13 - gagggacuuuugggggcagaugu - 35
• Deep sequencing: 80 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-365-1-5p
  • miRDB:gga-miR-365-1-5p

Mature sequence gga-miR-365-3p

• Accession: MIMAT0003361
• Sequence: 54 - uaaugccccuaaaaauccuuau - 75
• Deep sequencing: 1534 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-365-3p
  • miRDB:gga-miR-365-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).