Stem-loop sequence gga-mir-302c

Accession

MI0003701 (change log)

Description

Gallus gallus miR-302c stem-loop

Gene family

MIPF0000071; mir-302

Literature search

5 open access papers mention gga-mir-302c
(12 sentences)

Stem-loop

     u     uu             c    gcc 
5' cc ccgcu  aacauggagguac ugcu   u
   || |||||  ||||||||||||| ||||   a
3' gg gguga  uuguaccuucgug auga   c
     u     cu             a    aaa 

Deep sequencing

8 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 57456541-57456605 [+]
• Overlapping transcripts:

  antisense

  ENSGALT00000019679 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from gga-mir-302c

• gga-mir-302b: chr4: 57456279-57456350 [+]
• gga-mir-302c: chr4: 57456541-57456605 [+]
• gga-mir-1811: chr4: 57456663-57456743 [+]
• gga-mir-302a: chr4: 57456844-57456910 [+]
• gga-mir-302d: chr4: 57457179-57457247 [+]
• gga-mir-367: chr4: 57457315-57457387 [+]

Database links

• EntrezGene:MIR302C
• miRBase Tracker:MI0003701

Mature sequence gga-miR-302c-5p

• Accession: MIMAT0003358
• Previous IDs: gga-miR-302c*
• Sequence: 8 - uuuaacauggagguaccugcug - 29
• Deep sequencing: 1 reads, 1 experiments
• Evidence: by similarity; MI0000773
• Predicted targets:
  • TargetScanVert:gga-miR-302c-5p
  • miRDB:gga-miR-302c-5p

Mature sequence gga-miR-302c-3p

• Accession: MIMAT0003359
• Previous IDs: gga-miR-302c
• Sequence: 40 - uaagugcuuccauguuucagugg - 62
• Deep sequencing: 7 reads, 2 experiments
• Evidence: by similarity; MI0000773
• Predicted targets:
  • TargetScanVert:gga-miR-302c-3p
  • miRDB:gga-miR-302c-3p