Stem-loop sequence gga-mir-302b

Accession

MI0003700 (change log)

Description

Gallus gallus miR-302b stem-loop

Gene family

MIPF0000071; mir-302

Literature search

6 open access papers mention gga-mir-302b
(13 sentences)

Stem-loop

   cc        uu          ug   u  gugau 
5'   cuuuuacu  aacauggagg  cuu cu     u
     ||||||||  ||||||||||  ||| ||     u
3'   ggagauga  uuguaccuuc  gaa ga     u
   -u        uu          gu   u  aaaca 

Deep sequencing

10 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 57456279-57456350 [+]
• Overlapping transcripts:

  antisense

  ENSGALT00000019679 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from gga-mir-302b

• gga-mir-302b: chr4: 57456279-57456350 [+]
• gga-mir-302c: chr4: 57456541-57456605 [+]
• gga-mir-1811: chr4: 57456663-57456743 [+]
• gga-mir-302a: chr4: 57456844-57456910 [+]
• gga-mir-302d: chr4: 57457179-57457247 [+]
• gga-mir-367: chr4: 57457315-57457387 [+]

Database links

• EntrezGene:MIR302B
• miRBase Tracker:MI0003700

Mature sequence gga-miR-302b-5p

• Accession: MIMAT0003356
• Previous IDs: gga-miR-302b*
• Sequence: 8 - acuuuaacauggaggugcuuucu - 30
• Deep sequencing: 2 reads, 2 experiments
• Evidence: by similarity; MI0000772
• Predicted targets:
  • TargetScanVert:gga-miR-302b-5p
  • miRDB:gga-miR-302b-5p

Mature sequence gga-miR-302b-3p

• Accession: MIMAT0003357
• Previous IDs: gga-miR-302b
• Sequence: 46 - uaagugcuuccauguuuuaguag - 68
• Deep sequencing: 8 reads, 3 experiments
• Evidence: by similarity; MI0000772
• Predicted targets:
  • TargetScanVert:gga-miR-302b-3p
  • miRDB:gga-miR-302b-3p