Stem-loop sequence gga-mir-202

Accession

MI0003699 (change log)

Description

Gallus gallus miR-202 stem-loop

Gene family

MIPF0000121; mir-202

Literature search

4 open access papers mention gga-mir-202
(33 sentences)

Stem-loop

   --g   -        u           -a   a       g   gu 
5'    cuc guuguucc uuuuccuaugc  uau cuucuuu aga  u
      ||| |||||||| |||||||||||  ||| ||||||| |||   
3'    gag cagcgggg aaaaggguacg  aua ggagaaa ucu  u
   aug   u        u           ag   c       -   ag 

Deep sequencing

654 reads, 33.3 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr6: 21486722-21486810 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR202
• miRBase Tracker:MI0003699

Mature sequence gga-miR-202-5p

• Accession: MIMAT0003354
• Previous IDs: gga-miR-202*
• Sequence: 15 - uuuccuaugcauauacuucuuu - 36
• Deep sequencing: 371 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:gga-miR-202-5p
  • miRDB:gga-miR-202-5p

Mature sequence gga-miR-202-3p

• Accession: MIMAT0003355
• Previous IDs: gga-miR-202
• Sequence: 52 - agaggcauagagcaugggaaaa - 73
• Deep sequencing: 282 reads, 1 experiments
• Evidence: by similarity; MI0003130
• Predicted targets:
  • TargetScanVert:gga-miR-202-3p
  • miRDB:gga-miR-202-3p

References

1. " McBride D, Carre W, Law A, Clinton M Unpublished.