Stem-loop sequence gga-mir-193b

Accession

MI0003698 (change log)

Previous IDs

gga-mir-193

Description

Gallus gallus miR-193b stem-loop

Gene family

MIPF0000082; mir-193

Literature search

5 open access papers mention gga-mir-193b
(9 sentences)

Stem-loop

   g  gu -      u    gu    g    g  a  -----   u 
5'  ug  u ccagag cggg  uuug gggc ag ug     agc u
    ||  | |||||| ||||  |||| |||| || ||     |||  
3'  ac  g gguuuu gccc  aaac cccg uc ac     uug a
   -  ug u      c    ug    a    g  a  cuauu   u 

Deep sequencing

2518 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr14: 764296-764378 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000004821 ; intron 2

Clustered miRNAs

< 10kb from gga-mir-193b

• gga-mir-6686: chr14: 759895-760004 [+]
• gga-mir-193b: chr14: 764296-764378 [+]
• gga-mir-365b: chr14: 769102-769211 [-]
• gga-mir-365-1: chr14: 769114-769198 [+]

Database links

• EntrezGene:MIR193B
• miRBase Tracker:MI0003698

Mature sequence gga-miR-193b-5p

• Accession: MIMAT0026629
• Sequence: 14 - cgggguuuugggggcgagauga - 35
• Deep sequencing: 40 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-193b-5p
  • miRDB:gga-miR-193b-5p

Mature sequence gga-miR-193b-3p

• Accession: MIMAT0003353
• Previous IDs: gga-miR-193
• Sequence: 51 - aacuggcccacaaagucccgcuuu - 74
• Deep sequencing: 2477 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-193b-3p
  • miRDB:gga-miR-193b-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).