miRBase entry: dre-mir-34b

Stem-loop dre-mir-34b


Accession
MI0003690
Description
Danio rerio dre-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
10 open access papers mention dre-mir-34b
(36 sentences)

Sequence

211 reads, 39 reads per million, 5 experiments
gggguuggucugUAGGCAGUGUUGUUAGCUGAUUGuuucauaugaacuauaaucacuaaccauacugccaacacaacaaccuaca
.((((((...(((.((((((((.(((((.((((((((((....)))..)))))))))))).)))))))).)))...))))))...

Structure
--g      guc   A        U     C       --   a 
   ggguug   ugU GGCAGUGU GUUAG UGAUUGu  uuc u
   ||||||   ||| |||||||| ||||| |||||||  |||  
   uccaac   aca ccgucaua caauc acuaaua  aag a
aca      aac   a        c     -       uc   u 


Annotation confidence Not enough data
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Genome context
chr5: 57922520-57922604 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-34b

Accession MIMAT0003346
Description Danio rerio dre-miR-34b mature miRNA
Sequence 13 - UAGGCAGUGUUGUUAGCUGAUUG - 35
Evidence experimental
in-situ [1]
Database links
Predicted targets

References

  1. PubMed ID: 15919954
    MicroRNA expression in zebrafish embryonic development
    "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
    "Science (2005) 309:310-311