Stem-loop sequence hsa-mir-548d-2

Accession

MI0003671 (change log)

Symbol

HGNC:MIR548D2

Description

Homo sapiens miR-548d-2 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

58 open access papers mention hsa-mir-548d-2
(272 sentences)

Stem-loop

   gagagggaagau                 u                    a 
5'             uuagguuggugcaaaag aauugugguuuuugccauug a
               ||||||||||||||||| ||||||||||||||||||||  
3'             aauccaaccacguuuuc uugacaccaaaaacgguaau a
   -------aaaau                 u                    g 

Deep sequencing

13264 reads, 15.2 reads per million, 158 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 67471489-67471585 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000450689 ; MAP2K6-001; intron 1

  OTTHUMT00000450690 ; MAP2K6-003; intron 1

  OTTHUMT00000450691 ; MAP2K6-005; intron 1

  ENST00000590474 ; MAP2K6-001; intron 1

  ENST00000586641 ; MAP2K6-003; intron 1

  ENST00000359094 ; MAP2K6-005; intron 1

Clustered miRNAs

< 10kb from hsa-mir-548d-2

• hsa-mir-548aa-2: chr17: 67471489-67471585 [+]
• hsa-mir-548d-2: chr17: 67471489-67471585 [-]

Database links

• EntrezGene:MIR548D2
• HGNC:MIR548D2
• RNAcentral:URS0000759C79_9606
• miRBase Tracker:MI0003671

Mature sequence hsa-miR-548d-5p

• Accession: MIMAT0004812
• Sequence: 25 - aaaaguaauugugguuuuugcc - 46
• Deep sequencing: 25211 reads, 155 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00005F2D64_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548d-5p
  • TargetScanVert:hsa-miR-548d-5p
  • miRDB:hsa-miR-548d-5p
  • microrna.org:hsa-miR-548d-5p

Mature sequence hsa-miR-548d-3p

• Accession: MIMAT0003323
• Previous IDs: hsa-miR-548d
• Sequence: 61 - caaaaaccacaguuucuuuugc - 82
• Deep sequencing: 1156 reads, 91 experiments
• Evidence: experimental; RT-PCR [1], SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS000039FBF7_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548d-3p
  • TargetScanVert:hsa-miR-548d-3p
  • miRDB:hsa-miR-548d-3p
  • microrna.org:hsa-miR-548d-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).