Stem-loop sequence hsa-mir-661

Accession

MI0003669 (change log)

Symbol

HGNC:MIR661

Description

Homo sapiens miR-661 stem-loop

Gene family

MIPF0000465; mir-661

Literature search

19 open access papers mention hsa-mir-661
(174 sentences)

Stem-loop

   ggaga    gu   g gg  -  g         u   -   u   uuc 
5'      ggcu  gcu u  gg ca gcgcaggcc gag ccc ggu   g
        ||||  ||| |  || || ||||||||| ||| ||| |||    
3'      ucgg  ugg g  uc gu cgcguccgg cuc ggg ccg   g
   -----    --   g uu  a  g         u   u   u   ucg 

Deep sequencing

32 reads, 130 reads per million, 23 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 143945191-143945279 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000379658 ; GML-002; intron 3

  ENST00000522728 ; GML-002; intron 3

Database links

• EntrezGene:MIR661
• HGNC:MIR661
• miRBase Tracker:MI0003669

Mature sequence hsa-miR-661

• Accession: MIMAT0003324
• Sequence: 51 - ugccugggucucuggccugcgcgu - 74
• Deep sequencing: 15 reads, 13 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • TargetMiner:hsa-miR-661
  • TargetScanVert:hsa-miR-661
  • miRDB:hsa-miR-661
  • microrna.org:hsa-miR-661

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).