Stem-loop sequence hsa-mir-581

Accession

MI0003588 (change log)

Symbol

HGNC:MIR581

Description

Homo sapiens miR-581 stem-loop

Gene family

MIPF0000466; mir-581

Literature search

2 open access papers mention hsa-mir-581
(2 sentences)

Stem-loop

   -------   a    a          -       c       g   uuuua 
5'        guu ugug agguauucuu guguucu uagauca ugc     g
          ||| |||| |||||||||| ||||||| ||||||| |||     a
3'        caa acac uccauaagaa cacaaga aucuagu gug     a
   cguccac   g    a          a       a       -   uuuaa 

Deep sequencing

123 reads, 3.85 reads per million, 52 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 53951504-53951599 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR581
• HGNC:MIR581
• miRBase Tracker:MI0003588

Mature sequence hsa-miR-581

• Accession: MIMAT0003246
• Sequence: 16 - ucuuguguucucuagaucagu - 36
• Deep sequencing: 87 reads, 43 experiments
• Evidence: experimental; RT-PCR [1], SAGE [1]
• Predicted targets:
  • TargetMiner:hsa-miR-581
  • TargetScanVert:hsa-miR-581
  • miRDB:hsa-miR-581
  • microrna.org:hsa-miR-581

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).