Stem-loop sequence rno-mir-363

AccessionMI0003553 (change log)
DescriptionRattus norvegicus miR-363 stem-loop
Gene family MIPF0000138; mir-363
Literature search

9 open access papers mention rno-mir-363
(25 sentences)

         u   au         ca  a         ga  ag g 
5' uuuugc guu  cggguggau  cg ugcaauuuu  uu  a u
   |||||| |||  |||||||||  || |||||||||  ||  |  
3' aggacg caa  gucuaccua  gc acguuaaag  ag  u a
         c   au         ug  -         ag  gg a 
Get sequence
Deep sequencing
24843 reads, 13.3 reads per million, 467 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chrX: 140117098-140117184 [-]
Clustered miRNAs
< 10kb from rno-mir-363
rno-mir-17-2chrX: 140117891-140117968 [-]
rno-mir-20bchrX: 140117518-140117589 [-]
rno-mir-19b-2chrX: 140117379-140117474 [-]
rno-mir-92a-2chrX: 140117249-140117340 [-]
rno-mir-363chrX: 140117098-140117184 [-]
Database links

Mature sequence rno-miR-363-5p

Accession MIMAT0003209
Previous IDsrno-miR-363-5p;rno-miR-363*

13 - 


 - 34

Get sequence
Deep sequencing11 reads, 10 experiments
Evidence experimental; SOLiD [3]
Predicted targets

Mature sequence rno-miR-363-3p

Accession MIMAT0003210
Previous IDsrno-miR-363-3p;rno-miR-363

56 - 


 - 76

Get sequence
Deep sequencing24830 reads, 467 experiments
Evidence experimental; cloned [1-2], SOLiD [3]
Predicted targets


PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).