Stem-loop rno-mir-376c

Accession

MI0003543

Description

Rattus norvegicus rno-mir-376c precursor miRNA

Gene family

MIPF0000091; mir-368

Literature search

8 open access papers mention rno-mir-376c
(50 sentences)

Sequence

8423 reads, 20 reads per million, 337 experiments

uugguauuuaaaagGUGGAUAUUCCUUCUAUGUUUaugguauuuaugauuaAACAUAGAGGAAAUUUCACGUuuucagugucaa
.(((((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).))))))).

Structure

u       u    g     UA     U         uggua 
 ugguauu aaaa GUGGA  UUCCU CUAUGUUUa     u
 ||||||| |||| |||||  ||||| |||||||||     u
 acuguga uuuU CACUU  AAGGA GAUACAAau     u
a       c    G     UA     -         uagua 

Annotation confidence High

Genome context

chr6: 133872439-133872522 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-376c

Mature rno-miR-376c-5p

• Accession: MIMAT0017219
• Description: Rattus norvegicus rno-miR-376c-5p mature miRNA
• Sequence: 15 - GUGGAUAUUCCUUCUAUGUUU - 35
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-376c-3p

• Accession: MIMAT0003194
• Description: Rattus norvegicus rno-miR-376c-3p mature miRNA
• Sequence: 52 - AACAUAGAGGAAAUUUCACGU - 72
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267