miRBase entry: mmu-mir-450a-2

Stem-loop mmu-mir-450a-2


Accession
MI0003537
Symbol
MGI: Mir450-2
Description
Mus musculus mmu-mir-450a-2 precursor miRNA
Gene family
MIPF0000128; mir-450

Literature search
8 open access papers mention mmu-mir-450a-2
(84 sentences)

Sequence

26572 reads, 246 reads per million, 100 experiments
gaacuauUUUUGCGAUGUGUUCCUAAUAUguacuaugaguauAUUGGGGAUGCUUUGCAUUCAUgguuc
(((((((...(((((.(((((((((..(((((((...)))))))))))))))).)))))...)))))))

Structure
       UUU     U         AU       a 
gaacuau   UGCGA GUGUUCCUA  AUguacu  
|||||||   ||||| |||||||||  ||||||| u
cuuggUA   ACGUU CGUAGGGGU  UAuauga  
       CUU     U         --       g 


Annotation confidence High
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Genome context
chrX: 53048299-53048367 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mmu-mir-450a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-450a-5p

Accession MIMAT0001546
Description Mus musculus mmu-miR-450a-5p mature miRNA
Sequence 8 - UUUUGCGAUGUGUUCCUAAUAU - 29
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-450a-2-3p

Accession MIMAT0004789
Description Mus musculus mmu-miR-450a-2-3p mature miRNA
Sequence 43 - AUUGGGGAUGCUUUGCAUUCAU - 64
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267