Stem-loop rno-mir-543

Accession

MI0003525

Description

Rattus norvegicus rno-mir-543 precursor miRNA

Gene family

MIPF0000110; mir-329

Literature search

4 open access papers mention rno-mir-543
(16 sentences)

Sequence

16264 reads, 60 reads per million, 285 experiments

ggugcuuaaugagAAGUUGCCCGCGUGUUUUUCGcuuuauaugugacgAAACAUUCGCGGUGCACUUCUuuuucagcauc
((((((.((.(((((((.(((((((((((((((((.......)))).))))))..))))).))))))))).)).))))))

Structure

      u  u       U  -     --      -    uu 
ggugcu aa gagAAGU GC CCGCG  UGUUUU UCGc  u
|||||| || ||||||| || |||||  |||||| ||||  a
cuacga uu uUCUUCA CG GGCGC  ACAAAg agug  u
      c  u       -  U     UU      c    ua 

Annotation confidence High

Genome context

chr6: 133866660-133866739 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from rno-mir-543

Mature rno-miR-543-5p

• Accession: MIMAT0004787
• Description: Rattus norvegicus rno-miR-543-5p mature miRNA
• Sequence: 14 - AAGUUGCCCGCGUGUUUUUCG - 34
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-543-3p

• Accession: MIMAT0003175
• Description: Rattus norvegicus rno-miR-543-3p mature miRNA
• Sequence: 49 - AAACAUUCGCGGUGCACUUCU - 69
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267