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miRBase |
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Stem-loop sequence rno-mir-540 |
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Accession | MI0003524 (change log) | |||||||||||||||||||||
Description | Rattus norvegicus miR-540 stem-loop | |||||||||||||||||||||
Gene family | MIPF0000212; mir-540 | |||||||||||||||||||||
Literature search |
3 open access papers mention rno-mir-540 | |||||||||||||||||||||
Stem-loop |
ug c a ac u -g 5' ccc ggg ugggcc aggguc ccucugac cugu gcca ||| ||| |||||| |||||| |||||||| |||| ||| a 3' ggg cuc auccgg uccuag ggagacug gaca uggg gu - g cu - ga |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-540-5p |
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Accession | MIMAT0017211 |
Previous IDs | rno-miR-540* |
Sequence |
15 - caagggucacccucugacucugu - 37 |
Deep sequencing | 5275 reads, 245 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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Mature sequence rno-miR-540-3p |
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Accession | MIMAT0003174 |
Previous IDs | rno-miR-540 |
Sequence |
52 - aggucagaggucgauccugggc - 73 |
Deep sequencing | 23653 reads, 328 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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References |
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1 |
PMID:16274478
"Identification of clustered microRNAs using an ab initio prediction method"
BMC Bioinformatics. 6:267(2005).
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2 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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