miRBase entry: mmu-mir-546

Stem-loop mmu-mir-546


Accession
MI0003517
Symbol
MGI: Mir546
Description
Mus musculus mmu-mir-546 precursor miRNA

Literature search
4 open access papers mention mmu-mir-546
(5 sentences)

Sequence

51 reads, 41 reads per million, 19 experiments
ccucucuucccaaaacuaaacaggaucuaucAUGGUGGCACGGAGUCagcuagauguugucucuugcuaucccugugcuaguuccauguuuuagaagcaaagugauacuggggaggagagg
(((((((((((...(((((((((((.(((.((((((((((.((((.((((.....)))).)))))))))))...))).))).))).))))).........))).......)))))))))))

Structure
           ----aaa   ---------     -   u   u   ---       C    U    u 
ccucucuuccc       acu         aaaca gga cua cAU   GGUGGCA GGAG Cagc a
|||||||||||       |||         ||||| ||| ||| |||   ||||||| |||| |||| g
ggagaggaggg       uga         uuugu ccu gau gug   cuaucgu ucuc guug a
           gucauag   aacgaagau     a   u   c   ucc       -    u    u 


Annotation confidence Not enough data
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Genome context
chr10: 126998440-126998560 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-546
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-546

Accession MIMAT0003166
Description Mus musculus mmu-miR-546 mature miRNA
Sequence 32 - AUGGUGGCACGGAGUC - 47
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267