Stem-loop ppt-MIR537a

Accession

MI0003508

Description

Physcomitrella patens ppt-MIR537a precursor miRNA

Gene family

MIPF0000207; MIR537

Literature search

1 open access papers mention ppt-MIR537a
(1 sentences)

Sequence

guugucgucauauauggacuguagaaacaccugaagcgagugaggaccauccgauucuagccauggaaacagauaagagcucaugucuggguuccuguuucugugaugcuuuugagguuugcgcaugagauagcaucgguuaggcuucaaacucUUGAGGUGUUUCUACAGGCUAcauaugauugauagc
(((((((((((((.(((.((((((((((((((.(((.(..(((((.((..(((((.(((..(((((((((((....(((((((....))))))))))))))))))((((.............))))....))).)))))...)))))))..).))).)))))))))))))).))).)))))).)))))))

Structure

       -      a   a              g   c ag     a  -au     u   -----------------------gc           auaa       u 
guugucg ucauau ugg cuguagaaacaccu aag g  ugagg cc   ccgau cua                         cauggaaacag    gagcuca g
||||||| |||||| ||| |||||||||||||| ||| |  ||||| ||   ||||| |||                         |||||||||||    |||||||  
cgauagu aguaua AUC GACAUCUUUGUGGA UUc c  acuuc gg   ggcua gau                         gugucuuuguc    cuugggu u
       u      c   G              G   u aa     -  auu     c   agaguacgcguuuggaguuuucgua           ----       c 

Annotation confidence Not enough data

Genome context

Chr13: 5423921-5424110 [-]

Mature ppt-miR537a

• Accession: MIMAT0003145
• Description: Physcomitrella patens ppt-miR537a mature miRNA
• Sequence: 155 - UUGAGGUGUUUCUACAGGCUA - 175
• Evidence: experimental ; cloned [1-2], 454 [3]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769