miRBase entry: ppt-MIR156a

Stem-loop ppt-MIR156a


Accession
MI0003506
Description
Physcomitrella patens ppt-MIR156a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention ppt-MIR156a
(10 sentences)

Sequence

ggcgguggaggaugugggagUGACAGAAGAGAGUGAGCACagcugagcauguacaugaggaaguacuugcccaugugugcucacucucuuccugucgcaccucuccuuugacgcu
((((..((((((.(.((..((((((((((((((((((((((..((.(((.((((........)))).))).))..))))))))))))))).))))))).)).)))))))..))))

Structure
    gu      u u  ga       -               gc  a   u    aug 
ggcg  ggagga g gg  gUGACAG AAGAGAGUGAGCACa  ug gca guac   a
||||  |||||| | ||  ||||||| |||||||||||||||  || ||| ||||    
ucgc  uuuccu c cc  cgcuguc uucucucacucgugu  ac cgu caug   g
    ag      - u  -a       c               gu  c   u    aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr22: 4117123-4117237 [+]

Database links

Mature ppt-miR156a

Accession MIMAT0003143
Description Physcomitrella patens ppt-miR156a mature miRNA
Sequence 21 - UGACAGAAGAGAGUGAGCAC - 40
Evidence experimental
cloned [1-2], 454 [3]

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  3. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769