Stem-loop ppt-MIR535b

Accession

MI0003503

Description

Physcomitrella patens ppt-MIR535b precursor miRNA

Gene family

MIPF0000136; MIR535

Literature search

2 open access papers mention ppt-MIR535b
(3 sentences)

Sequence

gUGACAACGAGAGAGAGCACGCuggaaugcacucuuguaagaagcauggguauguucuugugugcccucucccgcugucgc
((((((.((.(((((.((((((.((((((.((((.(((.....))).)))).)))))).)))))).))))).)).))))))

Structure

      A  A     A      u      c    u   a 
gUGACA CG GAGAG GCACGC ggaaug acuc ugu a
|||||| || ||||| |||||| |||||| |||| ||| g
cgcugu gc cucuc cgugug ucuugu uggg acg a
      c  c     c      u      a    u   a 

Annotation confidence Not enough data

Genome context

Chr12: 4411506-4411586 [-]

Mature ppt-miR535b

• Accession: MIMAT0003140
• Description: Physcomitrella patens ppt-miR535b mature miRNA
• Sequence: 2 - UGACAACGAGAGAGAGCACGC - 22
• Evidence: experimental ; cloned [1], 454 [3]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769