Accession
MI0003499
Description
Physcomitrella patens
ppt-MIR319d precursor miRNA
Gene family
MIPF0000010;
MIR159
Literature search
3 open access papers mention ppt-MIR319d
(15 sentences)
(15 sentences)
Sequence
cagcgugGAGCUUUCUUCGGUCCAAUAgUGGCUGAGUCGAAGGUUGUGCugcugccgacucaaacuuccggcuucccuauccaaccccugguauggaauccgaaugucugauacgggagcuguucaaucuccggcuuagcaucuCUUGGACUGAAGGGAGCUCCCcgcug
(((((.(((((((((((((((((((.((..(((((((((.((((((.((.(((.(((..(((.((...(((.((((.((.(((.....))))).)))).)))...)).)))..))).))).)).)))))).)))))))))..)).))))))))))))))))))).)))))
(((((.(((((((((((((((((((.((..(((((((((.((((((.((.(((.(((..(((.((...(((.((((.((.(((.....))))).)))).)))...)).)))..))).))).)).)))))).)))))))))..)).))))))))))))))))))).)))))
Structure
u U UG A U u g ac a uuc c c u a
cagcg gGAGCUUUCUUCGGUCCAA Ag GCUGAGUCG AGGUUG GC gcu ccg uca ac cgg uucc ua cca c
||||| ||||||||||||||||||| || ||||||||| |||||| || ||| ||| ||| || ||| |||| || ||| c
gucgc CCUCGAGGGAAGUCAGGUU uc cgauucggc ucuaac ug cga ggc agu ug gcc aagg au ggu c
C C ua c u u g au c uaa u u - c
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr22: 1912128-1912297 [+]
Database links
Mature ppt-miR319d-5p.1
| Accession | MIMAT0004325 |
| Description | Physcomitrella patens ppt-miR319d-5p.1 mature miRNA |
| Sequence | 8 - GAGCUUUCUUCGGUCCAAUA - 27 |
| Evidence |
experimental
cloned [2] |
Mature ppt-miR319d-5p.2
| Accession | MIMAT0004326 |
| Description | Physcomitrella patens ppt-miR319d-5p.2 mature miRNA |
| Sequence | 29 - UGGCUGAGUCGAAGGUUGUGC - 49 |
| Evidence |
experimental
cloned [2] |
Mature ppt-miR319d-3p
| Accession | MIMAT0003136 |
| Description | Physcomitrella patens ppt-miR319d-3p mature miRNA |
| Sequence | 145 - CUUGGACUGAAGGGAGCUCCC - 165 |
| Evidence |
experimental
cloned [1], 454 [3] |
References
|
