miRBase entry: ppt-MIR319c

Stem-loop ppt-MIR319c


Accession
MI0003498
Description
Physcomitrella patens ppt-MIR319c precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
3 open access papers mention ppt-MIR319c
(15 sentences)

Sequence

uaaccucacuggcugugggagcuuccuucgguucaauaguggcugauaugagguugcacugcugccgacucaaacuuccggcuucccucucuuagaauggcagggaauccgaaugucugaugcgggagcugagcggucuucaacucagcuucuCUUGGACUGAAGGGAGCUCCCaugucuuugugguua
(((((.((..(((.((((((((((((((((((((((.((.((((((..(((((((((.(.(((.(((..(((.((...(((.((((((.((.......)).)))))).)))...)).)))..))).))).).)))).)))))..)))))).)).)))))))))))))))))))))))))..)).)))))

Structure
     u  cu   u                      u  u      ua     -    a u   g   ac   a  uuc   c      c  uu 
uaacc ca  ggc gugggagcuuccuucgguucaa ag ggcuga  ugagg uugc c gcu ccg  uca ac   cgg uucccu uc  a
||||| ||  ||| |||||||||||||||||||||| || ||||||  ||||| |||| | ||| |||  ||| ||   ||| |||||| ||  g
auugg gu  cug uaCCCUCGAGGGAAGUCAGGUU uc ucgacu  acuuc ggcg g cga ggc  agu ug   gcc aaggga gg  a
     u  uu   -                      C  u      ca     u    a u   g   gu   c  uaa   u      c  ua 


Annotation confidence Not enough data
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Genome context
Chr09: 7950311-7950499 [+]

Database links

Mature ppt-miR319c

Accession MIMAT0003135
Description Physcomitrella patens ppt-miR319c mature miRNA
Sequence 154 - CUUGGACUGAAGGGAGCUCCC - 174
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769